PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g00520.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 271aa    MW: 30670.2 Da    PI: 6.2418
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g00520.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.3e-14152196347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
   Vang06g00520.1 152 PWTEEEHRLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKY 196
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.3884094IPR017877Myb-like domain
SuperFamilySSF466893.09E-104293IPR009057Homeodomain-like
SMARTSM007172.0E-44496IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-44494IPR009057Homeodomain-like
CDDcd001672.68E-54790No hitNo description
PROSITE profilePS5129420.673145201IPR017930Myb domain
SuperFamilySSF466895.81E-17146201IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-17148200IPR006447Myb domain, plants
SMARTSM007177.3E-11149199IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-11149195IPR009057Homeodomain-like
PfamPF002497.9E-12152196IPR001005SANT/Myb domain
CDDcd001671.53E-9152197No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
LEHETRPLEK QILTLFIVFN STENTTPTMF HESSVTRWQP QPVQPTEWTR YHDKLFERAL  60
LLVPEDLPDR WNQIAVHVPG KTPAEVREHY DALVHDVFEI DSGRVEVPSY VDDLAPPQLS  120
GGAGNSAWDS ANQISFGSKP KQGETERKKG TPWTEEEHRL FLIGLSKFGK GDWRSISRNV  180
VVTRTPTQVA SHAQKYFLRQ NSGKKERKRS SIHDITTVDS NSLPVPIDQN WVPPPGTSMQ  240
QSSQDMLSYA SSSMQDQMGP FGYSNYGFEM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-14481101173RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512566.11e-178PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H71e-62DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0S3SLK80.0A0A0S3SLK8_PHAAN; Uncharacterized protein
TrEMBLA0A0L9U1R50.0A0A0L9U1R5_PHAAN; Uncharacterized protein
STRINGGLYMA20G24600.11e-139(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60683251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.12e-80MYB family protein